HL_8ONY_005

3D structure

PDB id

8ONY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

8ONY|1|5|U|2708, 8ONY|1|5|C|2709, 8ONY|1|5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONY_005 not in the Motif Atlas

Geometric match to HL_1KUQ_001

Geometric discrepancy: 0.3008

The information below is about HL_1KUQ_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8ONY|1|5|C|2704
8ONY|1|5|G|2705
8ONY|1|5|G|2706
8ONY|1|5|U|2707
8ONY|1|5|U|2708
8ONY|1|5|C|2709
8ONY|1|5|C|2710
8ONY|1|5|G|2711
8ONY|1|5|G|2712

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Methionine aminopeptidase 2

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a