HL_8ONZ_002

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONZ_002 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1384

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8ONZ|1|1|A|1445
8ONZ|1|1|U|1446
8ONZ|1|1|G|1447
8ONZ|1|1|A|1448
8ONZ|1|1|G|1449
8ONZ|1|1|A|1450
8ONZ|1|1|A|1451
8ONZ|1|1|C|1452
8ONZ|1|1|U|1453

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19