8ONZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ONZ_001 | GNRA | ||
| HL_8ONZ_002 | T-loop with 2 stacked bulged bases | ||
| HL_8ONZ_003 | Pseudoknot geometry with 3' bulge | ||
| HL_8ONZ_004 | No text annotation | ||
| HL_8ONZ_005 | No text annotation | ||
| HL_8ONZ_006 | GNRA with extra cWW | ||
| HL_8ONZ_010 | GNRA | ||
| HL_8ONZ_007 | No text annotation | ||
| HL_8ONZ_008 | Pseudoknot with intercalation | ||
| HL_8ONZ_009 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ONZ_001 | No text annotation | ||
| IL_8ONZ_002 | Minor groove platform | ||
| IL_8ONZ_003 | No text annotation | ||
| IL_8ONZ_004 | No text annotation | ||
| IL_8ONZ_005 | Tandem non-canonical cWW pairs | ||
| IL_8ONZ_006 | No text annotation | ||
| IL_8ONZ_007 | Tandem non-canonical cWW pairs | ||
| IL_8ONZ_008 | Isolated non-canonical cWW pair | ||
| IL_8ONZ_009 | Isolated non-canonical cWW pair | ||
| IL_8ONZ_010 | Isolated non-canonical cWW pair | ||
| IL_8ONZ_011 | Self complementary | ||
| IL_8ONZ_012 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ONZ_003 | No text annotation | ||
| J3_8ONZ_001 | No text annotation | ||
| J3_8ONZ_002 | No text annotation |
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