HL_8ONZ_006

3D structure

PDB id

8ONZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGGCAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ONZ_006 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.1969

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ONZ|1|1|G|1982
8ONZ|1|1|G|1983
8ONZ|1|1|G|1984
8ONZ|1|1|C|1985
8ONZ|1|1|A|1986
8ONZ|1|1|A|1987
8ONZ|1|1|C|1988
8ONZ|1|1|C|1989

Current chains

Chain 1

28S rRNA

Nearby chains

Chain A

Methionine aminopeptidase 2