HL_8OO0_007

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8OO0|1|1|G|212, 8OO0|1|1|A|213, 8OO0|1|1|G|214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1968

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8OO0|1|1|G|210
8OO0|1|1|U|211
8OO0|1|1|G|212
8OO0|1|1|A|213
8OO0|1|1|G|214
8OO0|1|1|A|215
8OO0|1|1|G|216
8OO0|1|1|C|217
8OO0|1|1|C|218

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein