HL_8OO0_012

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUC

Length

6 nucleotides

Bulged bases

8OO0|1|1|U|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_012 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.2659

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8OO0|1|1|G|456
8OO0|1|1|U|457
8OO0|1|1|U|458
8OO0|1|1|C|459
8OO0|1|1|U|460
8OO0|1|1|C|461

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain Lq

Putative 60S ribosomal protein