HL_8OO0_015

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8OO0|1|1|C|636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_015 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1349

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8OO0|1|1|U|628
8OO0|1|1|C|629
8OO0|1|1|U|630
8OO0|1|1|U|631
8OO0|1|1|G|632
8OO0|1|1|A|633
8OO0|1|1|A|634
8OO0|1|1|A|635
8OO0|1|1|C|636
8OO0|1|1|A|637

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain La

Ribosomal protein L18e/L15P domain-containing protein

Chain Le

60S ribosomal protein L32-like protein