HL_8OO0_023

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8OO0|1|1|C|941, 8OO0|1|1|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.3784

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OO0|1|1|C|940
8OO0|1|1|C|941
8OO0|1|1|U|942
8OO0|1|1|C|943
8OO0|1|1|A|944
8OO0|1|1|G|945

Current chains

Chain 1

28S rRNA

Nearby chains

Chain La

Ribosomal protein L18e/L15P domain-containing protein

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L44-like protein