HL_8OO0_028

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8OO0|1|1|A|1228

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_028 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.4731

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8OO0|1|1|C|1222
8OO0|1|1|A|1223
8OO0|1|1|U|1224
8OO0|1|1|G|1225
8OO0|1|1|G|1226
8OO0|1|1|A|1227
8OO0|1|1|A|1228
8OO0|1|1|G|1229
8OO0|1|1|U|1230
8OO0|1|1|C|1231
8OO0|1|1|G|1232

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L12-like protein