HL_8OO0_043

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8OO0|1|1|C|1846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_043 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.1289

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OO0|1|1|U|1842
8OO0|1|1|G|1843
8OO0|1|1|A|1844
8OO0|1|1|A|1845
8OO0|1|1|C|1846
8OO0|1|1|A|1847
8OO0|1|1|G|1848

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19