HL_8OO0_049

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8OO0|1|1|A|2219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1284

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OO0|1|1|G|2216
8OO0|1|1|U|2217
8OO0|1|1|A|2218
8OO0|1|1|A|2219
8OO0|1|1|C|2220
8OO0|1|1|U|2221
8OO0|1|1|A|2222
8OO0|1|1|U|2223
8OO0|1|1|G|2224
8OO0|1|1|A|2225
8OO0|1|1|C|2226

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

Methionine aminopeptidase 2

Chain Se

40S ribosomal protein S30