HL_8OO0_055
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAACCAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8OO0|1|1|A|2596, 8OO0|1|1|C|2603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_055 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.1541
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8OO0|1|1|U|2592
8OO0|1|1|U|2593
8OO0|1|1|A|2594
8OO0|1|1|A|2595
8OO0|1|1|A|2596
8OO0|1|1|C|2597
8OO0|1|1|C|2598
8OO0|1|1|A|2599
8OO0|1|1|U|2600
8OO0|1|1|A|2601
8OO0|1|1|A|2602
8OO0|1|1|C|2603
8OO0|1|1|G|2604
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain Lb
- 60S ribosomal protein L29
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