HL_8OO0_061

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_061 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2948

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8OO0|1|1|C|2799
8OO0|1|1|G|2800
8OO0|1|1|U|2801
8OO0|1|1|U|2802
8OO0|1|1|C|2803
8OO0|1|1|A|2804
8OO0|1|1|U|2805
8OO0|1|1|A|2806
8OO0|1|1|G|2807

Current chains

Chain 1

28S rRNA

Nearby chains

Chain D

Methionine aminopeptidase 2

Chain LI

60S ribosomal protein L10-like protein

Chain Lm

Ubiquitin-like domain-containing protein