HL_8OO0_062

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8OO0|1|1|G|2857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_062 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1512

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8OO0|1|1|A|2856
8OO0|1|1|G|2857
8OO0|1|1|C|2858
8OO0|1|1|A|2859
8OO0|1|1|G|2860
8OO0|1|1|A|2861
8OO0|1|1|A|2862
8OO0|1|1|U|2863

Current chains

Chain 1

28S rRNA

Nearby chains

Chain D

Methionine aminopeptidase 2

Chain LH

60S ribosomal protein l9-like protein

Chain Lm

Ubiquitin-like domain-containing protein