HL_8OO0_066

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_066 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1629

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8OO0|1|1|C|3026
8OO0|1|1|G|3027
8OO0|1|1|A|3028
8OO0|1|1|C|3029
8OO0|1|1|C|3030
8OO0|1|1|G|3031

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein