HL_8OO0_068

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8OO0|1|1|C|3145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_068 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1064

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OO0|1|1|C|3143
8OO0|1|1|U|3144
8OO0|1|1|C|3145
8OO0|1|1|C|3146
8OO0|1|1|G|3147
8OO0|1|1|G|3148

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LS

60S ribosomal protein L20