HL_8OO0_079
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAUUGGC
- Length
- 9 nucleotides
- Bulged bases
- 8OO0|1|2|G|334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_079 not in the Motif Atlas
- Homologous match to HL_8C3A_199
- Geometric discrepancy: 0.1778
- The information below is about HL_8C3A_199
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8OO0|1|2|G|327
8OO0|1|2|G|328
8OO0|1|2|U|329
8OO0|1|2|A|330
8OO0|1|2|U|331
8OO0|1|2|U|332
8OO0|1|2|G|333
8OO0|1|2|G|334
8OO0|1|2|C|335
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11-like protein
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