HL_8OO0_080

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_080 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1852

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8OO0|1|2|U|365
8OO0|1|2|U|366
8OO0|1|2|A|367
8OO0|1|2|G|368
8OO0|1|2|G|369
8OO0|1|2|G|370

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2-like protein

Chain SJ

40S ribosomal protein s9-like protein

Chain SL

40S ribosomal protein S11-like protein

Chain SW

40S ribosomal protein S22-like protein