HL_8OO0_092

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8OO0|1|2|U|1002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_092 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1431

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8OO0|1|2|G|995
8OO0|1|2|A|996
8OO0|1|2|U|997
8OO0|1|2|C|998
8OO0|1|2|A|999
8OO0|1|2|G|1000
8OO0|1|2|A|1001
8OO0|1|2|U|1002
8OO0|1|2|A|1003
8OO0|1|2|C|1004
8OO0|1|2|C|1005

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

Hyaluronan/mRNA-binding protein domain-containing protein

Chain SO

40S ribosomal protein S14-like protein