HL_8OO0_099

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8OO0|1|2|U|1311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_099 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1461

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8OO0|1|2|C|1306
8OO0|1|2|U|1307
8OO0|1|2|U|1308
8OO0|1|2|A|1309
8OO0|1|2|A|1310
8OO0|1|2|U|1311
8OO0|1|2|U|1312
8OO0|1|2|G|1313

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-like protein

Chain Sa

40S ribosomal protein S26