HL_8OO0_103
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8OO0|1|2|A|1555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OO0_103 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.153
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OO0|1|2|A|1546
8OO0|1|2|U|1547
8OO0|1|2|U|1548
8OO0|1|2|G|1549
8OO0|1|2|C|1550
8OO0|1|2|A|1551
8OO0|1|2|A|1552
8OO0|1|2|U|1553
8OO0|1|2|U|1554
8OO0|1|2|A|1555
8OO0|1|2|U|1556
8OO0|1|2|U|1557
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein s15-like protein
- Chain SS
- Putative ribosomal protein
- Chain ST
- 40S ribosomal protein S19-like protein
- Chain Sd
- 40S ribosomal protein S29
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