HL_8OO0_113

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OO0_113 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3076

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8OO0|1|1|G|349
8OO0|1|1|A|350
8OO0|1|1|G|351
8OO0|1|1|U|352
8OO0|1|1|G|353
8OO0|1|1|A|354
8OO0|1|1|U|355
8OO0|1|1|C|356

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

60S ribosomal protein L39