HL_8OVE_001

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

G(OMU)UGAUUCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_001 not in the Motif Atlas

Homologous match to HL_8C3A_192

Geometric discrepancy: 0.1054

The information below is about HL_8C3A_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.3

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8OVE|1|AA|G|35
8OVE|1|AA|OMU|36
8OVE|1|AA|U|37
8OVE|1|AA|G|38
8OVE|1|AA|A|39
8OVE|1|AA|U|40
8OVE|1|AA|U|41
8OVE|1|AA|C|42
8OVE|1|AA|U|43
8OVE|1|AA|G|44
8OVE|1|AA|C|45

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AP

40S ribosomal protein S2, putative

Chain AS

40S ribosomal protein S23, putative