8OVE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8OVE_001 | 1/AA/35:45 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8OVE_002 | 1/AA/87:91 | No text annotation | ||
| HL_8OVE_004 | 1/AA/186:192 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_8OVE_007 | 1/AA/337:344 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8OVE_009 | 1/AA/424:432 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8OVE_010 | 1/AA/461:466 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8OVE_011 | 1/AA/486:497 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8OVE_012 | 1/AA/507:512 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8OVE_013 | 1/AA/543:554 | No text annotation | geometric HL_2ZNI_001 HL_75660.9 | |
| HL_8OVE_015 | 1/AA/616:631 | No text annotation | ||
| HL_8OVE_016 | 1/AA/671:676 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8OVE_019 | 1/AA/932:939 | No text annotation | ||
| HL_8OVE_020 | 1/AA/998:1007 | No text annotation | geometric HL_2JLT_001 HL_14856.1 | |
| HL_8OVE_022 | 1/AA/1177:1186 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8OVE_023 | 1/AA/1214:1219 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8OVE_024 | 1/AA/1274:1284 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8OVE_026 | 1/AA/1487:1492 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8OVE_119 | 1/AA/1526:1531 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8OVE_028 | 1/AA/1593:1602 | No text annotation | homologous HL_8P9A_215 HL_97521.2 | |
| HL_8OVE_030 | 1/AA/1701:1706 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8OVE_031 | 1/AA/1714:1721 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8OVE_033 | 1/AA/1861:1869 | No text annotation | geometric HL_5U3G_001 HL_75660.9 | |
| HL_8OVE_035 | 1/AA/1989:2000 | No text annotation | ||
| HL_8OVE_036 | 1/AA/2044:2055 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8OVE_037 | 1/AA/2088:2098 | No text annotation | geometric HL_5J7L_029 NA | |
| HL_8OVE_039 | 1/AA/2257:2262 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8OVE_040 | 1/AB/6:67 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_8OVE_041 | 1/BA/40:47 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_8OVE_042 | 1/BA/71:76 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8OVE_043 | 1/BA/93:99 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8OVE_044 | 1/BA/133:140 | No text annotation | ||
| HL_8OVE_045 | 1/BA/217:225 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_8OVE_046 | 1/BA/241:250 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8OVE_047 | 1/BA/264:268 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_8OVE_048 | 1/BA/272:280 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8OVE_049 | 1/BA/345:354 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8OVE_050 | 1/BA/371:380 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8OVE_051 | 1/BA/427:432 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8OVE_052 | 1/BA/453:458 | GNRA | geometric HL_5UZ6_001 HL_34789.5 | |
| HL_8OVE_055 | 1/BA/736:747 | No text annotation | ||
| HL_8OVE_057 | 1/BA/811:816 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8OVE_061 | 1/BA/964:969 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8OVE_120 | 1/BA/996:1005 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8OVE_063 | 1/BA/1030:1038 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8OVE_064 | 1/BA/1078:1083 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8OVE_067 | 1/BA/1260:1266 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8OVE_068 | 1/BA/1282:1289 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8OVE_071 | 1/BA/1573:1578 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8OVE_073 | 1/BA/1694:1700 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8OVE_074 | 1/BA/1732:1739 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_005 NA | |
| HL_8OVE_075 | 1/BA/1837:1847 | No text annotation | ||
| HL_8OVE_076 | 1/BB/27:34 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8OVE_077 | 1/BB/45:51 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8OVE_078 | 1/BB/107:112 | UNCG | geometric HL_4LFB_009 HL_61337.5 | |
| HL_8OVE_079 | 1/BB/399:409 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8OVE_080 | 1/BB/428:434 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8OVE_081 | 1/BB/483:490 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.3 | |
| HL_8OVE_082 | 1/BB/517:527 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8OVE_083 | 1/BB/556:564 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8OVE_084 | 1/BB/633:642 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8OVE_086 | 1/BB/813:820 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_8OVE_089 | 1/BB/1059:1067 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_8OVE_121 | 1/BB/1076:1088 | No text annotation | homologous HL_8P9A_166 HL_02042.2 | |
| HL_8OVE_091 | 1/BB/1136:1143 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8OVE_092 | 1/BB/1168:1176 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8OVE_093 | 1/BB/1188:1193 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8OVE_094 | 1/BB/1230:1238 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_8OVE_095 | 1/BB/1294:1302 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8OVE_096 | 1/BB/1351:1358 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8OVE_097 | 1/BB/1372:1382 | No text annotation | ||
| HL_8OVE_098 | 1/BB/1417:1422 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8OVE_099 | 1/BB/1475:1481 | GNRA | geometric HL_2OIU_001 HL_34789.5 | |
| HL_8OVE_100 | 1/BB/1489:1503 | No text annotation | ||
| HL_8OVE_101 | 1/BB/1520:1528 | No text annotation | ||
| HL_8OVE_102 | 1/BC/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_8OVE_104 | 1/BC/107:113 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8OVE_122 | 1/BD/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8OVE_105 | 1/BD/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8OVE_106 | 1/BD/86:91 | GNRA | homologous HL_8C3A_074 NA | |
| HL_8OVE_107 | 1/BE/6:11 | GNRA | geometric HL_5TBW_030 NA | |
| HL_8OVE_123 | 1/BE/52:64 | No text annotation | ||
| HL_8OVE_108 | 1/BE/54:62 | No text annotation | geometric HL_5TBW_037 NA | |
| HL_8OVE_109 | 1/BE/116:124 | No text annotation | geometric HL_2Y9H_005 HL_44506.3 | |
| HL_8OVE_112 | 1/BG/7:17 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8OVE_113 | 1/BG/53:58 | GNRA | geometric HL_7A0S_063 HL_34789.5 | |
| HL_8OVE_114 | 1/BG/96:101 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8OVE_115 | 1/BG/138:152 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8OVE_116 | 1/BH/13:21 | No text annotation | geometric HL_5TBW_070 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8OVE_003 | No text annotation | ||
| HL_8OVE_005 | No text annotation | ||
| HL_8OVE_006 | No text annotation | ||
| HL_8OVE_008 | No text annotation | ||
| HL_8OVE_014 | No text annotation | ||
| HL_8OVE_017 | No text annotation | ||
| HL_8OVE_018 | No text annotation | ||
| HL_8OVE_021 | No text annotation | ||
| HL_8OVE_025 | No text annotation | ||
| HL_8OVE_027 | GNRA with extra cWW | ||
| HL_8OVE_029 | No text annotation | ||
| HL_8OVE_032 | No text annotation | ||
| HL_8OVE_034 | No text annotation | ||
| HL_8OVE_038 | No text annotation | ||
| HL_8OVE_053 | No text annotation | ||
| HL_8OVE_054 | No text annotation | ||
| HL_8OVE_056 | No text annotation | ||
| HL_8OVE_058 | No text annotation | ||
| HL_8OVE_059 | No text annotation | ||
| HL_8OVE_060 | No text annotation | ||
| HL_8OVE_062 | No text annotation | ||
| HL_8OVE_065 | Externally structured | ||
| HL_8OVE_066 | No text annotation | ||
| HL_8OVE_069 | No text annotation | ||
| HL_8OVE_070 | No text annotation | ||
| HL_8OVE_072 | No text annotation | ||
| HL_8OVE_085 | No text annotation | ||
| HL_8OVE_087 | No text annotation | ||
| HL_8OVE_088 | No text annotation | ||
| HL_8OVE_090 | No text annotation | ||
| HL_8OVE_103 | No text annotation | ||
| HL_8OVE_110 | No text annotation | ||
| HL_8OVE_111 | Externally structured | ||
| HL_8OVE_117 | No text annotation | ||
| HL_8OVE_118 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8OVE_002 | 1/AA/52:54, 1/AA/702:703 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_8OVE_004 | 1/AA/65:69, 1/AA/564:569 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8OVE_005 | 1/AA/70:76, 1/AA/524:526 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8OVE_006 | 1/AA/78:80, 1/AA/521:522 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8OVE_264 | 1/AA/86:92, 1/AA/111:114 | No text annotation | ||
| IL_8OVE_007 | 1/AA/92:97, 1/AA/107:111 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8OVE_008 | 1/AA/134:137, 1/AA/396:399 | Tandem non-canonical cWW pairs | geometric IL_4EYA_010 IL_37443.1 | |
| IL_8OVE_009 | 1/AA/138:141, 1/AA/394:395 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8OVE_010 | 1/AA/142:146, 1/AA/390:393 | No text annotation | geometric IL_4LFB_008 IL_60988.3 | |
| IL_8OVE_011 | 1/AA/146:150, 1/AA/386:390 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8OVE_012 | 1/AA/175:181, 1/AA/197:204 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8OVE_013 | 1/AA/220:223, 1/AA/272:274 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.5 | |
| IL_8OVE_014 | 1/AA/280:283, 1/AA/352:358 | No text annotation | ||
| IL_8OVE_017 | 1/AA/405:410, 1/AA/442:449 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8OVE_265 | 1/AA/412:417, 1/AA/439:440 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8OVE_019 | 1/AA/421:423, 1/AA/433:435 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_8OVE_021 | 1/AA/456:458, 1/AA/469:474 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8OVE_022 | 1/AA/481:484, 1/AA/499:502 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_8OVE_023 | 1/AA/532:534, 1/AA/561:562 | Single bulged U | homologous IL_8C3A_415 NA | |
| IL_8OVE_024 | 1/AA/536:540, 1/AA/558:559 | C-loop | geometric IL_5J7L_018 NA | |
| IL_8OVE_025 | 1/AA/540:541, 1/AA/556:558 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_8OVE_027 | 1/AA/648:651, 1/AA/691:694 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.3 | |
| IL_8OVE_028 | 1/AA/652:661, 1/AA/688:690 | Isolated cWH basepair | geometric IL_8C3A_407 NA | |
| IL_8OVE_029 | 1/AA/664:670, 1/AA/677:685 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8OVE_030 | 1/AA/718:724, 1/AA/1509:1510 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8OVE_031 | 1/AA/729:733, 1/AA/1245:1249 | tSH-tWH-tHS | homologous IL_8C3A_428 NA | |
| IL_8OVE_032 | 1/AA/746:750, 1/AA/798:801 | No text annotation | ||
| IL_8OVE_266 | 1/AA/746:763, 1/AA/788:801 | No text annotation | ||
| IL_8OVE_033 | 1/AA/750:757, 1/AA/792:798 | No text annotation | ||
| IL_8OVE_037 | 1/AA/838:849, 1/AA/887:893 | No text annotation | ||
| IL_8OVE_038 | 1/AA/915:931, 1/AA/940:946 | No text annotation | ||
| IL_8OVE_039 | 1/AA/975:980, 1/AA/1015:1020 | No text annotation | ||
| IL_8OVE_267 | 1/AA/1144:1145, 1/AA/1235:1237 | Single bulged C | geometric IL_1S03_006 IL_05642.4 | |
| IL_8OVE_043 | 1/AA/1147:1151, 1/AA/1230:1233 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_8OVE_044 | 1/AA/1151:1155, 1/AA/1227:1230 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8OVE_045 | 1/AA/1162:1166, 1/AA/1200:1204 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8OVE_046 | 1/AA/1172:1176, 1/AA/1187:1194 | Kink-turn | geometric IL_6UFM_001 IL_71972.2 | |
| IL_8OVE_047 | 1/AA/1262:1267, 1/AA/1291:1293 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8OVE_048 | 1/AA/1267:1271, 1/AA/1287:1291 | tSH-tWH-tHS | geometric IL_4LFB_033 IL_05821.2 | |
| IL_8OVE_049 | 1/AA/1311:1313, 1/AA/1500:1506 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8OVE_050 | 1/AA/1318:1321, 1/AA/1476:1479 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_8OVE_051 | 1/AA/1321:1323, 1/AA/1474:1476 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.5 | |
| IL_8OVE_054 | 1/AA/1515:1523, 1/AA/1534:1540 | No text annotation | ||
| IL_8OVE_056 | 1/AA/1551:1552, 1/AA/2125:2127 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8OVE_268 | 1/AA/1554:1556, 1/AA/2122:2123 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8OVE_058 | 1/AA/1562:1565, 1/AA/2112:2116 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8OVE_059 | 1/AA/1577:1579, 1/AA/1932:1934 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_01003.5 | |
| IL_8OVE_061 | 1/AA/1583:1584, 1/AA/1926:1928 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8OVE_062 | 1/AA/1618:1620, 1/AA/1915:1917 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_8OVE_063 | 1/AA/1673:1675, 1/AA/1907:1908 | Single bulged U | geometric IL_3MEI_001 IL_97561.6 | |
| IL_8OVE_065 | 1/AA/1677:1681, 1/AA/1903:1905 | No text annotation | homologous IL_8C3A_456 NA | |
| IL_8OVE_270 | 1/AA/1677:1683, 1/AA/1897:1905 | No text annotation | homologous IL_8P9A_439 IL_99893.2 | |
| IL_8OVE_066 | 1/AA/1681:1683, 1/AA/1897:1903 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8OVE_271 | 1/AA/1685:1686, 1/AA/1893:1895 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8OVE_068 | 1/AA/1695:1697, 1/AA/1728:1730 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8OVE_070 | 1/AA/1746:1752, 1/AA/1842:1848 | No text annotation | ||
| IL_8OVE_071 | 1/AA/1754:1758, 1/AA/1836:1840 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8OVE_074 | 1/AA/1854:1856, 1/AA/1874:1879 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_8OVE_075 | 1/AA/1943:1944, 1/AA/2023:2025 | Single bulged A | geometric IL_6D3P_004 NA | |
| IL_8OVE_076 | 1/AA/1944:1945, 1/AA/2021:2023 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_8OVE_272 | 1/AA/1947:1955, 1/AA/2010:2019 | No text annotation | ||
| IL_8OVE_077 | 1/AA/2034:2039, 1/AA/2060:2066 | No text annotation | geometric IL_4LFB_055 IL_57885.3 | |
| IL_8OVE_078 | 1/AA/2041:2043, 1/AA/2056:2058 | Isolated cWH basepair | geometric IL_4J50_001 IL_10892.3 | |
| IL_8OVE_079 | 1/AA/2131:2133, 1/AA/2243:2246 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_8OVE_080 | 1/AA/2133:2136, 1/AA/2239:2243 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8OVE_081 | 1/AA/2137:2139, 1/AA/2236:2238 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_8OVE_082 | 1/AA/2139:2141, 1/AA/2233:2236 | No text annotation | geometric IL_6DME_003 IL_75527.3 | |
| IL_8OVE_084 | 1/AA/2148:2151, 1/AA/2223:2226 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8OVE_085 | 1/AA/2151:2155, 1/AA/2219:2223 | No text annotation | ||
| IL_8OVE_086 | 1/AA/2156:2158, 1/AA/2216:2218 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_8OVE_087 | 1/AA/2163:2164, 1/AA/2209:2211 | Minor groove platform | geometric IL_4UYK_001 IL_34520.4 | |
| IL_8OVE_273 | 1/AA/2163:2166, 1/AA/2208:2211 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8OVE_088 | 1/AA/2164:2166, 1/AA/2208:2209 | Minor groove platform | geometric IL_4LFB_004 IL_34520.4 | |
| IL_8OVE_089 | 1/AA/2170:2172, 1/AA/2202:2204 | Isolated non-canonical cWW pair | geometric IL_5ZTM_002 IL_71625.4 | |
| IL_8OVE_090 | 1/AA/2172:2176, 1/AA/2198:2202 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_8OVE_091 | 1/BA/10:11, 1/BC/164:166 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8OVE_093 | 1/BA/15:16, 1/BC/156:160 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_8OVE_094 | 1/BA/29:30, 1/BA/58:60 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8OVE_095 | 1/BA/33:40, 1/BA/47:55 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_8OVE_096 | 1/BA/84:92, 1/BA/100:106 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8OVE_097 | 1/BA/123:126, 1/BA/152:153 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_8OVE_274 | 1/BA/123:128, 1/BA/146:153 | No text annotation | ||
| IL_8OVE_098 | 1/BA/126:128, 1/BA/146:152 | No text annotation | ||
| IL_8OVE_099 | 1/BA/128:129, 1/BA/144:146 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_8OVE_100 | 1/BA/181:185, 1/BA/313:315 | Isolated non-canonical cWW pair | geometric IL_4V88_426 NA | |
| IL_8OVE_101 | 1/BA/188:190, 1/BA/306:310 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
| IL_8OVE_103 | 1/BA/193:194, 1/BA/299:303 | C-loop | geometric IL_4LFB_013 IL_06671.2 | |
| IL_8OVE_106 | 1/BA/203:205, 1/BA/260:261 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8OVE_107 | 1/BA/399:401, 1/BC/31:34 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_8OVE_108 | 1/BA/407:409, 1/BC/24:25 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8OVE_109 | 1/BA/438:440, 1/BC/19:20 | Single bulged U | geometric IL_2R8S_004 IL_97561.6 | |
| IL_8OVE_110 | 1/BA/447:450, 1/BA/461:474 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_8OVE_112 | 1/BA/475:481, 1/BC/12:18 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_8OVE_114 | 1/BA/498:501, 1/BA/727:730 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_8OVE_115 | 1/BA/506:508, 1/BA/721:722 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_8OVE_117 | 1/BA/526:528, 1/BA/710:711 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8OVE_118 | 1/BA/533:534, 1/BA/614:616 | No text annotation | ||
| IL_8OVE_119 | 1/BA/536:537, 1/BA/609:612 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_8OVE_122 | 1/BA/556:558, 1/BA/575:577 | Isolated non-canonical cWW pair | geometric IL_4P3T_001 NA | |
| IL_8OVE_123 | 1/BA/632:637, 1/BA/689:691 | No text annotation | ||
| IL_8OVE_124 | 1/BA/640:643, 1/BA/683:686 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_8OVE_125 | 1/BA/644:646, 1/BA/680:682 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_68118.5 | |
| IL_8OVE_126 | 1/BA/648:651, 1/BA/676:679 | Tandem non-canonical cWW pairs | geometric IL_5EW4_001 IL_76776.3 | |
| IL_8OVE_275 | 1/BA/761:763, 1/BA/916:918 | Isolated cWH basepair | geometric IL_8C3A_413 NA | |
| IL_8OVE_128 | 1/BA/766:768, 1/BA/911:913 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.5 | |
| IL_8OVE_130 | 1/BA/821:823, 1/BA/832:834 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.5 | |
| IL_8OVE_131 | 1/BA/842:846, 1/BA/867:872 | No text annotation | ||
| IL_8OVE_276 | 1/BA/842:848, 1/BA/865:872 | No text annotation | ||
| IL_8OVE_132 | 1/BA/846:848, 1/BA/865:867 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.5 | |
| IL_8OVE_133 | 1/BA/878:879, 1/BA/899:901 | Single bulged A | homologous IL_8P9A_252 IL_14190.3 | |
| IL_8OVE_134 | 1/BA/880:882, 1/BA/896:898 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_8OVE_277 | 1/BA/923:925, 1/BA/1058:1060 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.5 | |
| IL_8OVE_278 | 1/BA/925:929, 1/BA/1051:1058 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8OVE_137 | 1/BA/948:949, 1/BA/1015:1017 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8OVE_138 | 1/BA/953:954, 1/BA/979:981 | Single bulged G | geometric IL_7A0S_017 IL_28408.3 | |
| IL_8OVE_139 | 1/BA/954:958, 1/BA/975:979 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8OVE_140 | 1/BA/960:962, 1/BA/971:973 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.5 | |
| IL_8OVE_141 | 1/BA/989:992, 1/BA/1008:1010 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8OVE_279 | 1/BA/993:995, 1/BA/1006:1007 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8OVE_142 | 1/BA/1027:1029, 1/BA/1039:1043 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_8OVE_143 | 1/BA/1064:1065, 1/BA/1544:1546 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_8OVE_144 | 1/BA/1074:1076, 1/BA/1085:1087 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8OVE_145 | 1/BA/1089:1090, 1/BA/1245:1247 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8OVE_147 | 1/BA/1108:1110, 1/BA/1234:1235 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_8OVE_148 | 1/BA/1117:1122, 1/BA/1177:1182 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_8OVE_149 | 1/BA/1122:1123, 1/BA/1175:1177 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_8OVE_280 | 1/BA/1124:1129, 1/BA/1171:1174 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8OVE_281 | 1/BA/1131:1134, 1/BA/1166:1169 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8OVE_152 | 1/BA/1134:1136, 1/BA/1164:1166 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8OVE_153 | 1/BA/1200:1202, 1/BA/1212:1213 | Single bulged A | geometric IL_4P43_002 NA | |
| IL_8OVE_154 | 1/BA/1254:1256, 1/BA/1270:1272 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8OVE_156 | 1/BA/1301:1305, 1/BA/1477:1481 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8OVE_157 | 1/BA/1307:1314, 1/BA/1464:1475 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_8OVE_282 | 1/BA/1307:1317, 1/BA/1463:1475 | No text annotation | ||
| IL_8OVE_158 | 1/BA/1314:1317, 1/BA/1463:1464 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8OVE_159 | 1/BA/1318:1320, 1/BA/1461:1462 | No text annotation | ||
| IL_8OVE_160 | 1/BA/1323:1332, 1/BA/1453:1458 | No text annotation | ||
| IL_8OVE_161 | 1/BA/1332:1344, 1/BA/1438:1453 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8OVE_162 | 1/BA/1346:1348, 1/BA/1435:1436 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8OVE_163 | 1/BA/1491:1493, 1/BA/1531:1532 | No text annotation | ||
| IL_8OVE_164 | 1/BA/1547:1549, 1/BA/1599:1602 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8OVE_165 | 1/BA/1556:1558, 1/BA/1590:1592 | Isolated non-canonical cWW pair | geometric IL_3NJ7_004 IL_42997.6 | |
| IL_8OVE_166 | 1/BA/1558:1565, 1/BA/1586:1590 | Kink-turn | geometric IL_4V9F_048 IL_90775.2 | |
| IL_8OVE_167 | 1/BA/1565:1566, 1/BA/1584:1586 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_8OVE_168 | 1/BA/1568:1571, 1/BA/1580:1582 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8OVE_283 | 1/BA/1615:1621, 1/BB/618:623 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8OVE_171 | 1/BA/1688:1693, 1/BA/1701:1704 | No text annotation | homologous IL_8C3A_066 NA | |
| IL_8OVE_172 | 1/BA/1721:1725, 1/BA/1823:1828 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8OVE_173 | 1/BA/1726:1728, 1/BA/1820:1822 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_01003.5 | |
| IL_8OVE_175 | 1/BA/1835:1836, 1/BA/1848:1853 | No text annotation | ||
| IL_8OVE_176 | 1/BA/1858:1863, 1/BB/7:12 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_8OVE_177 | 1/BA/1864:1866, 1/BB/4:6 | Isolated non-canonical cWW pair | geometric IL_5MSF_001 IL_01003.5 | |
| IL_8OVE_299 | 1/BB/66:71, 1/BB/611:613 | No text annotation | ||
| IL_8OVE_180 | 1/BB/74:76, 1/BB/607:608 | No text annotation | ||
| IL_8OVE_181 | 1/BB/79:81, 1/BB/602:604 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.2 | |
| IL_8OVE_285 | 1/BB/82:85, 1/BB/600:601 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8OVE_286 | 1/BB/82:90, 1/BB/597:601 | No text annotation | homologous IL_8P9A_305 IL_80252.2 | |
| IL_8OVE_183 | 1/BB/85:90, 1/BB/597:600 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.2 | |
| IL_8OVE_184 | 1/BB/102:107, 1/BB/112:118 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8OVE_185 | 1/BB/124:126, 1/BB/372:374 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8OVE_186 | 1/BB/131:132, 1/BB/364:367 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8OVE_287 | 1/BB/392:393, 1/BB/587:589 | Single bulged A | homologous IL_8P9A_310 IL_14190.3 | |
| IL_8OVE_187 | 1/BB/420:425, 1/BB/437:444 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8OVE_190 | 1/BB/460:463, 1/BB/509:510 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_8OVE_191 | 1/BB/464:465, 1/BB/505:508 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_8OVE_192 | 1/BB/468:470, 1/BB/501:502 | Single bulged U | geometric IL_4WF9_030 IL_97561.6 | |
| IL_8OVE_193 | 1/BB/470:474, 1/BB/499:501 | No text annotation | ||
| IL_8OVE_194 | 1/BB/475:480, 1/BB/493:498 | No text annotation | geometric IL_4V9F_057 IL_34822.1 | |
| IL_8OVE_197 | 1/BB/540:541, 1/BB/571:574 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8OVE_288 | 1/BB/541:552, 1/BB/568:571 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8OVE_201 | 1/BB/655:658, 1/BB/1440:1442 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8OVE_289 | 1/BB/660:662, 1/BB/1435:1438 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8OVE_290 | 1/BB/673:675, 1/BB/1265:1266 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8OVE_291 | 1/BB/676:677, 1/BB/1261:1264 | Minor groove platform | homologous IL_8P9A_322 IL_34520.4 | |
| IL_8OVE_207 | 1/BB/687:689, 1/BB/1047:1050 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8OVE_208 | 1/BB/701:703, 1/BB/772:774 | Isolated non-canonical cWW pair | geometric IL_3GM7_004 IL_01003.5 | |
| IL_8OVE_209 | 1/BB/784:790, 1/BB/1025:1029 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_8OVE_210 | 1/BB/800:807, 1/BB/826:827 | No text annotation | ||
| IL_8OVE_212 | 1/BB/832:838, 1/BB/969:975 | No text annotation | ||
| IL_8OVE_292 | 1/BB/995:997, 1/BB/1014:1016 | Isolated non-canonical cWW pair | geometric IL_6M6R_001 IL_01003.5 | |
| IL_8OVE_214 | 1/BB/1057:1058, 1/BB/1068:1070 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_8OVE_215 | 1/BB/1109:1111, 1/BB/1129:1133 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8OVE_216 | 1/BB/1157:1159, 1/BB/1184:1185 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_8OVE_293 | 1/BB/1160:1164, 1/BB/1180:1183 | No text annotation | geometric IL_2O3Y_003 IL_34618.2 | |
| IL_8OVE_218 | 1/BB/1212:1214, 1/BB/1242:1243 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_8OVE_219 | 1/BB/1214:1227, 1/BB/1241:1242 | No text annotation | ||
| IL_8OVE_294 | 1/BB/1277:1278, 1/BB/1319:1321 | Major groove platform | homologous IL_8P9A_329 IL_48076.9 | |
| IL_8OVE_295 | 1/BB/1278:1280, 1/BB/1317:1319 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.5 | |
| IL_8OVE_296 | 1/BB/1280:1282, 1/BB/1316:1317 | No text annotation | homologous IL_8P9A_331 IL_46637.3 | |
| IL_8OVE_222 | 1/BB/1282:1284, 1/BB/1312:1316 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_36931.3 | |
| IL_8OVE_223 | 1/BB/1289:1293, 1/BB/1303:1307 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8OVE_224 | 1/BB/1330:1331, 1/BB/1403:1405 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_8OVE_225 | 1/BB/1333:1335, 1/BB/1397:1401 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8OVE_226 | 1/BB/1335:1336, 1/BB/1394:1397 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8OVE_227 | 1/BB/1345:1346, 1/BB/1363:1366 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8OVE_228 | 1/BB/1349:1351, 1/BB/1358:1360 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_8OVE_230 | 1/BB/1414:1415, 1/BB/1424:1426 | Single bulged A | geometric IL_1U9S_001 IL_14190.3 | |
| IL_8OVE_231 | 1/BB/1518:1520, 1/BB/1528:1530 | Isolated cWH basepair | geometric IL_3FOZ_001 NA | |
| IL_8OVE_233 | 1/BC/64:65, 1/BC/93:95 | No text annotation | ||
| IL_8OVE_234 | 1/BC/121:126, 1/BC/137:142 | No text annotation | ||
| IL_8OVE_235 | 1/BD/15:16, 1/BD/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8OVE_236 | 1/BD/21:27, 1/BD/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8OVE_237 | 1/BD/28:30, 1/BD/47:51 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_8OVE_238 | 1/BD/32:36, 1/BD/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_8OVE_239 | 1/BD/71:78, 1/BD/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_8OVE_240 | 1/BD/82:85, 1/BD/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8OVE_241 | 1/BE/22:24, 1/BE/210:211 | Minor groove platform | geometric IL_4LFB_045 IL_24264.2 | |
| IL_8OVE_297 | 1/BE/29:37, 1/BE/189:205 | No text annotation | ||
| IL_8OVE_243 | 1/BE/37:42, 1/BE/184:189 | UAA/GAN with extra cWW | geometric IL_4V9F_096 IL_91079.1 | |
| IL_8OVE_244 | 1/BE/42:44, 1/BE/182:184 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_8OVE_245 | 1/BE/44:47, 1/BE/179:182 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.3 | |
| IL_8OVE_246 | 1/BE/52:54, 1/BE/62:64 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.5 | |
| IL_8OVE_247 | 1/BE/68:72, 1/BE/145:150 | No text annotation | geometric IL_5TBW_071 NA | |
| IL_8OVE_248 | 1/BE/73:75, 1/BE/142:144 | Isolated non-canonical cWW pair | geometric IL_5MWI_005 NA | |
| IL_8OVE_252 | 1/BG/30:31, 1/BG/173:175 | Single bulged G | geometric IL_2IZN_001 IL_28408.3 | |
| IL_8OVE_253 | 1/BG/31:35, 1/BG/167:173 | No text annotation | ||
| IL_8OVE_254 | 1/BG/46:53, 1/BG/58:64 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8OVE_255 | 1/BG/75:79, 1/BG/119:122 | C-loop | geometric IL_7RQB_104 NA | |
| IL_8OVE_256 | 1/BG/82:87, 1/BG/112:116 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_8OVE_257 | 1/BG/91:92, 1/BG/105:108 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8OVE_298 | 1/BG/131:136, 1/BG/154:159 | No text annotation | ||
| IL_8OVE_260 | 1/BH/36:38, 1/BH/103:109 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_8OVE_261 | 1/BH/39:45, 1/BH/97:102 | No text annotation | ||
| IL_8OVE_262 | 1/BH/52:54, 1/BH/68:70 | Isolated non-canonical cWW pair | geometric IL_2ZKO_001 IL_01003.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8OVE_001 | Isolated non-canonical cWW pair | ||
| IL_8OVE_003 | Tandem non-canonical cWW pairs | ||
| IL_8OVE_263 | No text annotation | ||
| IL_8OVE_015 | Isolated non-canonical cWW pair | ||
| IL_8OVE_016 | Isolated non-canonical cWW pair | ||
| IL_8OVE_018 | No text annotation | ||
| IL_8OVE_020 | Isolated cWH basepair | ||
| IL_8OVE_026 | Isolated non-canonical cWW pair | ||
| IL_8OVE_034 | No text annotation | ||
| IL_8OVE_035 | No text annotation | ||
| IL_8OVE_036 | Isolated non-canonical cWW pair | ||
| IL_8OVE_040 | No text annotation | ||
| IL_8OVE_041 | No text annotation | ||
| IL_8OVE_042 | Isolated non-canonical cWW pair | ||
| IL_8OVE_052 | No text annotation | ||
| IL_8OVE_053 | Decoding loop related | ||
| IL_8OVE_055 | Isolated non-canonical cWW pair | ||
| IL_8OVE_057 | Isolated non-canonical cWW pair | ||
| IL_8OVE_060 | Isolated non-canonical cWW pair | ||
| IL_8OVE_269 | No text annotation | ||
| IL_8OVE_064 | Isolated non-canonical cWW pair | ||
| IL_8OVE_067 | Isolated non-canonical cWW pair | ||
| IL_8OVE_069 | Isolated non-canonical cWW pair | ||
| IL_8OVE_072 | No text annotation | ||
| IL_8OVE_073 | Isolated non-canonical cWW pair | ||
| IL_8OVE_083 | Tandem non-canonical cWW pairs | ||
| IL_8OVE_092 | Isolated non-canonical cWW pair | ||
| IL_8OVE_102 | Isolated non-canonical cWW pair | ||
| IL_8OVE_104 | Isolated non-canonical cWW pair | ||
| IL_8OVE_105 | Isolated non-canonical cWW pair | ||
| IL_8OVE_111 | Stack and bulge | ||
| IL_8OVE_113 | Isolated non-canonical cWW pair | ||
| IL_8OVE_116 | No text annotation | ||
| IL_8OVE_120 | No text annotation | ||
| IL_8OVE_121 | No text annotation | ||
| IL_8OVE_127 | No text annotation | ||
| IL_8OVE_129 | No text annotation | ||
| IL_8OVE_135 | No text annotation | ||
| IL_8OVE_136 | Isolated non-canonical cWW pair | ||
| IL_8OVE_146 | No text annotation | ||
| IL_8OVE_150 | No text annotation | ||
| IL_8OVE_151 | No text annotation | ||
| IL_8OVE_155 | Tandem non-canonical cWW pairs | ||
| IL_8OVE_169 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_8OVE_170 | Isolated non-canonical cWW pair | ||
| IL_8OVE_174 | No text annotation | ||
| IL_8OVE_178 | Not an internal loop | ||
| IL_8OVE_284 | No text annotation | ||
| IL_8OVE_179 | No text annotation | ||
| IL_8OVE_182 | Major groove platform with extra pair | ||
| IL_8OVE_188 | Isolated cWS basepair | ||
| IL_8OVE_189 | Stack and bulge | ||
| IL_8OVE_195 | Not an internal loop | ||
| IL_8OVE_196 | Not an internal loop | ||
| IL_8OVE_198 | No text annotation | ||
| IL_8OVE_199 | Stack and bulge | ||
| IL_8OVE_200 | Isolated cWS basepair | ||
| IL_8OVE_202 | Isolated non-canonical cWW pair | ||
| IL_8OVE_203 | No text annotation | ||
| IL_8OVE_204 | Isolated non-canonical cWW pair | ||
| IL_8OVE_205 | No text annotation | ||
| IL_8OVE_206 | Isolated non-canonical cWW pair | ||
| IL_8OVE_211 | Isolated non-canonical cWW pair | ||
| IL_8OVE_213 | Tandem non-canonical cWW pairs | ||
| IL_8OVE_217 | No text annotation | ||
| IL_8OVE_220 | Not an internal loop | ||
| IL_8OVE_221 | No text annotation | ||
| IL_8OVE_229 | No text annotation | ||
| IL_8OVE_232 | Isolated cWH basepair | ||
| IL_8OVE_242 | Isolated cWH basepair | ||
| IL_8OVE_249 | No text annotation | ||
| IL_8OVE_250 | No text annotation | ||
| IL_8OVE_251 | Isolated non-canonical cWW pair | ||
| IL_8OVE_258 | No text annotation | ||
| IL_8OVE_259 | Major groove intercalation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8OVE_020 | 1/AA/69:70, 1/AA/526:532, 1/AA/562:564 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8OVE_021 | 1/AA/69:76, 1/AA/524:532, 1/AA/562:564 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_8OVE_022 | 1/AA/1160:1161, 1/AA/1205:1213, 1/AA/1220:1222 | No text annotation | geometric J3_1G1X_002 NA | |
| J3_8OVE_001 | 1/AA/1314:1318, 1/AA/1479:1486, 1/AA/1493:1499 | No text annotation | ||
| J3_8OVE_023 | 1/AA/1314:1326, 1/AA/1471:1486, 1/AA/1493:1499 | No text annotation | ||
| J3_8OVE_002 | 1/AA/1566:1570, 1/AA/2075:2082, 1/AA/2104:2111 | No text annotation | ||
| J3_8OVE_003 | 1/AA/1573:1576, 1/AA/1935:1937, 1/AA/2069:2072 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8OVE_024 | 1/AA/1585:1592, 1/AA/1603:1614, 1/AA/1921:1925 | No text annotation | homologous J3_8P9A_078 J3_88451.2 | |
| J3_8OVE_005 | 1/AA/1620:1625, 1/AA/1668:1672, 1/AA/1909:1915 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8OVE_037 | 1/AA/1688:1693, 1/AA/1732:1737, 1/AA/1886:1891 | No text annotation | homologous J3_8P9A_080 J3_17077.2 | |
| J3_8OVE_025 | 1/AA/1698:1699, 1/AA/1708:1712, 1/AA/1723:1727 | No text annotation | homologous J3_8P9A_081 J3_76043.5 | |
| J3_8OVE_007 | 1/AA/1741:1744, 1/AA/1850:1854, 1/AA/1879:1882 | No text annotation | ||
| J3_8OVE_026 | 1/AA/1741:1744, 1/AA/1850:1856, 1/AA/1874:1882 | No text annotation | ||
| J3_8OVE_008 | 1/AA/1937:1941, 1/AA/2027:2034, 1/AA/2066:2069 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8OVE_027 | 1/BA/199:203, 1/BA/261:271, 1/BA/281:286 | No text annotation | ||
| J3_8OVE_028 | 1/BA/410:426, 1/BA/433:438, 1/BC/20:23 | No text annotation | homologous J3_8P9A_045 J3_07616.2 | |
| J3_8OVE_029 | 1/BA/440:447, 1/BA/474:475, 1/BC/18:19 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8OVE_030 | 1/BA/440:450, 1/BA/461:475, 1/BC/18:19 | No text annotation | homologous J3_8P9A_047 J3_17917.2 | |
| J3_8OVE_031 | 1/BA/531:533, 1/BA/616:630, 1/BA/693:707 | No text annotation | ||
| J3_8OVE_032 | 1/BA/531:534, 1/BA/614:630, 1/BA/693:707 | No text annotation | ||
| J3_8OVE_010 | 1/BA/934:940, 1/BA/1025:1027, 1/BA/1043:1046 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8OVE_011 | 1/BA/949:951, 1/BA/983:987, 1/BA/1012:1015 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8OVE_013 | 1/BA/1667:1673, 1/BB/40:42, 1/BB/54:57 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8OVE_014 | 1/BA/1676:1679, 1/BB/20:26, 1/BB/35:37 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8OVE_033 | 1/BA/1714:1721, 1/BA/1828:1834, 1/BA/1854:1856 | No text annotation | ||
| J3_8OVE_015 | 1/BB/695:699, 1/BB/776:781, 1/BB/1032:1041 | No text annotation | ||
| J3_8OVE_034 | 1/BB/1094:1096, 1/BB/1198:1208, 1/BB/1247:1252 | No text annotation | ||
| J3_8OVE_016 | 1/BB/1107:1109, 1/BB/1133:1135, 1/BB/1144:1149 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8OVE_017 | 1/BB/1340:1343, 1/BB/1368:1370, 1/BB/1384:1390 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8OVE_035 | 1/BC/44:45, 1/BC/58:64, 1/BC/95:99 | No text annotation | homologous J3_8P4V_024 NA | |
| J3_8OVE_036 | 1/BD/9:14, 1/BD/65:66, 1/BD/109:110 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_8OVE_018 | 1/BH/9:11, 1/BH/23:29, 1/BH/124:128 | No text annotation | ||
| J3_8OVE_019 | 1/BH/47:52, 1/BH/70:75, 1/BH/90:95 | No text annotation | ||
| J4_8OVE_001 | 1/AA/124:132, 1/AA/401:403, 1/AA/451:454, 1/AA/476:477 | No text annotation | homologous J4_8P9A_021 J4_15241.3 | |
| J4_8OVE_002 | 1/AA/718:726, 1/AA/1252:1257, 1/AA/1298:1309, 1/AA/1508:1510 | No text annotation | ||
| J4_8OVE_003 | 1/BA/116:117, 1/BA/334:339, 1/BA/360:367, 1/BA/384:387 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_8OVE_004 | 1/BA/199:203, 1/BA/261:264, 1/BA/268:271, 1/BA/281:286 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8OVE_005 | 1/BA/1622:1628, 1/BA/1663:1664, 1/BB/60:63, 1/BB/616:617 | No text annotation | homologous J4_8P9A_014 J4_34212.2 | |
| J4_8OVE_006 | 1/BA/1680:1684, 1/BA/1708:1714, 1/BA/1856:1863, 1/BB/7:19 | No text annotation | ||
| J4_8OVE_007 | 1/BB/90:98, 1/BB/122:123, 1/BB/375:386, 1/BB/595:597 | No text annotation | ||
| J4_8OVE_008 | 1/BB/394:398, 1/BB/410:414, 1/BB/450:454, 1/BB/581:586 | No text annotation | homologous J4_8P9A_017 J4_78485.2 | |
| J4_8OVE_009 | 1/BB/456:458, 1/BB/512:513, 1/BB/531:540, 1/BB/574:579 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8OVE_010 | 1/BB/1097:1101, 1/BB/1155:1157, 1/BB/1185:1186, 1/BB/1195:1197 | No text annotation | ||
| J4_8OVE_011 | 1/BB/1097:1101, 1/BB/1155:1159, 1/BB/1184:1186, 1/BB/1195:1197 | No text annotation | homologous J4_8P9A_019 J4_59590.2 | |
| J4_8OVE_012 | 1/BG/37:40, 1/BG/70:71, 1/BG/126:128, 1/BG/162:165 | No text annotation | ||
| J5_8OVE_001 | 1/AA/59:63, 1/AA/571:576, 1/AA/608:615, 1/AA/632:651, 1/AA/691:697 | No text annotation | ||
| J5_8OVE_008 | 1/AA/82:85, 1/AA/115:122, 1/AA/479:484, 1/AA/499:504, 1/AA/515:519 | No text annotation | ||
| J5_8OVE_003 | 1/BA/22:24, 1/BC/35:42, 1/BC/101:106, 1/BC/114:115, 1/BC/148:150 | No text annotation | homologous J5_8P9A_010 J5_27223.2 | |
| J5_8OVE_004 | 1/BA/755:760, 1/BA/919:922, 1/BA/1061:1064, 1/BA/1546:1547, 1/BA/1602:1608 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8OVE_005 | 1/BA/1680:1684, 1/BA/1708:1721, 1/BA/1828:1834, 1/BA/1854:1863, 1/BB/7:19 | No text annotation | ||
| J5_8OVE_006 | 1/BB/663:670, 1/BB/1269:1277, 1/BB/1321:1330, 1/BB/1405:1411, 1/BB/1429:1434 | No text annotation | ||
| J5_8OVE_007 | 1/BB/680:683, 1/BB/1054:1057, 1/BB/1070:1071, 1/BB/1093:1094, 1/BB/1252:1258 | No text annotation | homologous J5_8P9A_015 J5_96125.2 | |
| J6_8OVE_001 | 1/BA/24:29, 1/BA/60:70, 1/BA/77:81, 1/BA/109:114, 1/BA/389:399, 1/BC/34:35 | No text annotation | ||
| J6_8OVE_002 | 1/BA/772:775, 1/BA/806:810, 1/BA/817:820, 1/BA/835:842, 1/BA/872:878, 1/BA/901:907 | No text annotation | ||
| J6_8OVE_003 | 1/BB/680:683, 1/BB/1054:1057, 1/BB/1070:1071, 1/BB/1093:1096, 1/BB/1198:1208, 1/BB/1247:1258 | No text annotation | ||
| J7_8OVE_001 | 1/BA/1069:1074, 1/BA/1087:1089, 1/BA/1247:1251, 1/BA/1275:1280, 1/BA/1291:1295, 1/BA/1487:1488, 1/BA/1535:1540 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8OVE_004 | No text annotation | ||
| J3_8OVE_006 | No text annotation | ||
| J3_8OVE_009 | No text annotation | ||
| J3_8OVE_012 | No text annotation | ||
| J5_8OVE_002 | No text annotation |
Coloring options: