HL_8OVE_008

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_008 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.351

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8OVE|1|AA|G|368
8OVE|1|AA|C|369
8OVE|1|AA|U|375
8OVE|1|AA|G|376
8OVE|1|AA|C|377

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A3

40S ribosomal protein S6