HL_8OVE_013

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAAAAUACG

Length

12 nucleotides

Bulged bases

8OVE|1|AA|A|545, 8OVE|1|AA|C|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_013 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2006

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|AA|C|543
8OVE|1|AA|G|544
8OVE|1|AA|A|545
8OVE|1|AA|A|546
8OVE|1|AA|A|547
8OVE|1|AA|A|548
8OVE|1|AA|A|549
8OVE|1|AA|A|550
8OVE|1|AA|U|551
8OVE|1|AA|A|552
8OVE|1|AA|C|553
8OVE|1|AA|G|554

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain AT

40S ribosomal protein S24