HL_8OVE_020

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUGUUGGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_020 not in the Motif Atlas

Geometric match to HL_2JLT_001

Geometric discrepancy: 0.3841

The information below is about HL_2JLT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OVE|1|AA|A|998
8OVE|1|AA|U|999
8OVE|1|AA|G|1000
8OVE|1|AA|U|1001
8OVE|1|AA|U|1002
8OVE|1|AA|G|1003
8OVE|1|AA|G|1004
8OVE|1|AA|U|1005
8OVE|1|AA|U|1006
8OVE|1|AA|U|1007

Current chains

Chain AA

SSU rRNA

Nearby chains