HL_8OVE_023

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_023 not in the Motif Atlas

Homologous match to HL_8C3A_212

Geometric discrepancy: 0.0868

The information below is about HL_8C3A_212

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OVE|1|AA|C|1214
8OVE|1|AA|G|1215
8OVE|1|AA|A|1216
8OVE|1|AA|A|1217
8OVE|1|AA|G|1218
8OVE|1|AA|G|1219

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AG

40S ribosomal protein S13, putative

Chain AV

40S ribosomal protein S26