HL_8OVE_025

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCUCAG

Length

8 nucleotides

Bulged bases

8OVE|1|AA|U|1462, 8OVE|1|AA|A|1464

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_025 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2111

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|AA|C|1399
8OVE|1|AA|C|1400
8OVE|1|AA|U|1401
8OVE|1|AA|C|1461
8OVE|1|AA|U|1462
8OVE|1|AA|C|1463
8OVE|1|AA|A|1464
8OVE|1|AA|G|1465

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A0

40S ribosomal protein S3a

Chain AW

40S ribosomal protein S27, putative