HL_8OVE_027
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCGCAA(OMG)A
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_027 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.266
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8OVE|1|AA|U|1525
8OVE|1|AA|C|1526
8OVE|1|AA|G|1527
8OVE|1|AA|C|1528
8OVE|1|AA|A|1529
8OVE|1|AA|A|1530
8OVE|1|AA|OMG|1531
8OVE|1|AA|A|1532
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bo
- 60S ribosomal protein L37a, putative
- Chain Bz
- Ribosomal protein L41
Coloring options: