HL_8OVE_032

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUUGUCCACACAGGACAGCAUCCUUC

Length

27 nucleotides

Bulged bases

8OVE|1|AA|C|1772, 8OVE|1|AA|A|1773, 8OVE|1|AA|A|1821, 8OVE|1|AA|U|1822

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|AA|G|1761
8OVE|1|AA|A|1762
8OVE|1|AA|U|1763
8OVE|1|AA|U|1764
8OVE|1|AA|G|1765
8OVE|1|AA|U|1766
8OVE|1|AA|C|1767
8OVE|1|AA|C|1768
8OVE|1|AA|A|1769
8OVE|1|AA|C|1770
8OVE|1|AA|A|1771
8OVE|1|AA|C|1772
8OVE|1|AA|A|1773
8OVE|1|AA|G|1774
8OVE|1|AA|G|1775
8OVE|1|AA|A|1776
8OVE|1|AA|C|1777
8OVE|1|AA|A|1778
8OVE|1|AA|G|1779
8OVE|1|AA|C|1780
8OVE|1|AA|A|1821
8OVE|1|AA|U|1822
8OVE|1|AA|C|1823
8OVE|1|AA|C|1824
8OVE|1|AA|U|1825
8OVE|1|AA|U|1826
8OVE|1|AA|C|1827

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A2

40S ribosomal protein S5, putative

Chain AK

40S ribosomal protein S16, putative

Chain AO

Ribosomal protein S19, putative

Chain AU

40S ribosomal protein S25