HL_8OVE_039

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8OVE|1|AA|G|2259

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_039 not in the Motif Atlas

Homologous match to HL_8C3A_227

Geometric discrepancy: 0.2213

The information below is about HL_8C3A_227

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OVE|1|AA|G|2257
8OVE|1|AA|U|2258
8OVE|1|AA|G|2259
8OVE|1|AA|MA6|2260
8OVE|1|AA|MA6|2261
8OVE|1|AA|C|2262

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain Bz

Ribosomal protein L41