HL_8OVE_045

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAACCCGUU

Length

9 nucleotides

Bulged bases

8OVE|1|BA|A|218, 8OVE|1|BA|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_045 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2302

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8OVE|1|BA|A|217
8OVE|1|BA|A|218
8OVE|1|BA|A|219
8OVE|1|BA|C|220
8OVE|1|BA|C|221
8OVE|1|BA|C|222
8OVE|1|BA|G|223
8OVE|1|BA|U|224
8OVE|1|BA|U|225

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain Bc

60S ribosomal protein L28, putative

Chain Bi

60S ribosomal protein L32, putative

Chain Br

60S ribosomal protein L4