HL_8OVE_052

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_052 not in the Motif Atlas

Geometric match to HL_5UZ6_001

Geometric discrepancy: 0.0743

The information below is about HL_5UZ6_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8OVE|1|BA|U|453
8OVE|1|BA|G|454
8OVE|1|BA|G|455
8OVE|1|BA|A|456
8OVE|1|BA|A|457
8OVE|1|BA|A|458

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BR

60S ribosomal protein L17, putative