HL_8OVE_066

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAUAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_066 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2338

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OVE|1|BA|U|1203
8OVE|1|BA|U|1204
8OVE|1|BA|A|1205
8OVE|1|BA|U|1206
8OVE|1|BA|A|1210
8OVE|1|BA|A|1211

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain Bd

60S ribosomal protein L29

Chain Bu

60S ribosomal protein L5, putative