HL_8OVE_070

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCGGCUAUAUGUGAGAAAGUGUAGC

Length

25 nucleotides

Bulged bases

8OVE|1|BA|G|1499, 8OVE|1|BA|C|1501, 8OVE|1|BA|A|1525, 8OVE|1|BA|G|1526

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OVE|1|BA|G|1497
8OVE|1|BA|C|1498
8OVE|1|BA|G|1499
8OVE|1|BA|G|1500
8OVE|1|BA|C|1501
8OVE|1|BA|U|1502
8OVE|1|BA|A|1503
8OVE|1|BA|U|1504
8OVE|1|BA|A|1505
8OVE|1|BA|U|1506
8OVE|1|BA|G|1507
8OVE|1|BA|U|1514
8OVE|1|BA|G|1515
8OVE|1|BA|A|1516
8OVE|1|BA|G|1517
8OVE|1|BA|A|1518
8OVE|1|BA|A|1519
8OVE|1|BA|A|1520
8OVE|1|BA|G|1521
8OVE|1|BA|U|1522
8OVE|1|BA|G|1523
8OVE|1|BA|U|1524
8OVE|1|BA|A|1525
8OVE|1|BA|G|1526
8OVE|1|BA|C|1527

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BI

60S ribosomal protein L18

Chain Bc

60S ribosomal protein L28, putative

Chain Bi

60S ribosomal protein L32, putative

Chain Br

60S ribosomal protein L4

Chain Bw

60S ribosomal protein L7, putative