HL_8OVE_072
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAAUAUUUUUAAAUGCAAC
- Length
- 20 nucleotides
- Bulged bases
- 8OVE|1|BA|A|1639, 8OVE|1|BA|U|1642
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_072 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.2287
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8OVE|1|BA|G|1634
8OVE|1|BA|G|1635
8OVE|1|BA|A|1636
8OVE|1|BA|A|1637
8OVE|1|BA|U|1638
8OVE|1|BA|A|1639
8OVE|1|BA|U|1640
8OVE|1|BA|U|1641
8OVE|1|BA|U|1642
8OVE|1|BA|U|1643
8OVE|1|BA|U|1648
8OVE|1|BA|A|1649
8OVE|1|BA|A|1650
8OVE|1|BA|A|1651
8OVE|1|BA|U|1652
8OVE|1|BA|G|1653
8OVE|1|BA|C|1654
8OVE|1|BA|A|1655
8OVE|1|BA|A|1656
8OVE|1|BA|C|1657
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- SrRNA 4
- Chain BR
- 60S ribosomal protein L17, putative
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Bh
- 60S ribosomal subunit protein L31, putative
Coloring options: