HL_8OVE_074

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUACACC

Length

8 nucleotides

Bulged bases

8OVE|1|BA|C|1738

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_074 not in the Motif Atlas

Geometric match to HL_5TBW_005

Geometric discrepancy: 0.2517

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8OVE|1|BA|G|1732
8OVE|1|BA|U|1733
8OVE|1|BA|U|1734
8OVE|1|BA|A|1735
8OVE|1|BA|C|1736
8OVE|1|BA|A|1737
8OVE|1|BA|C|1738
8OVE|1|BA|C|1739

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

Ribosomal protein L15

Chain Bn

Ribosomal protein L37