HL_8OVE_081

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACGAGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_081 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3177

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8OVE|1|BB|A|483
8OVE|1|BB|C|484
8OVE|1|BB|G|485
8OVE|1|BB|A|486
8OVE|1|BB|G|487
8OVE|1|BB|A|488
8OVE|1|BB|U|489
8OVE|1|BB|U|490

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain Bm

Ribosomal protein L36, putative

Chain Bt

60S ribosomal protein L44