HL_8OVE_089

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8OVE|1|BB|G|1061

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_089 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8OVE|1|BB|C|1059
8OVE|1|BB|U|1060
8OVE|1|BB|G|1061
8OVE|1|BB|OMG|1062
8OVE|1|BB|G|1063
8OVE|1|BB|G|1064
8OVE|1|BB|C|1065
8OVE|1|BB|G|1066
8OVE|1|BB|G|1067

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BK

60S ribosomal protein L10, putative

Chain Bd

60S ribosomal protein L29