HL_8OVE_106
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGUGAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_106 not in the Motif Atlas
- Homologous match to HL_8C3A_074
- Geometric discrepancy: 0.076
- The information below is about HL_8C3A_074
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
8OVE|1|BD|A|86
8OVE|1|BD|G|87
8OVE|1|BD|U|88
8OVE|1|BD|G|89
8OVE|1|BD|A|90
8OVE|1|BD|U|91
Current chains
- Chain BD
- 5S rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BS
- 60S ribosomal protein L18a
- Chain Bw
- 60S ribosomal protein L7, putative
Coloring options: