HL_8OVE_107

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OVE_107 not in the Motif Atlas

Geometric match to HL_5TBW_030

Geometric discrepancy: 0.1508

The information below is about HL_5TBW_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OVE|1|BE|G|6
8OVE|1|BE|G|7
8OVE|1|BE|A|8
8OVE|1|BE|A|9
8OVE|1|BE|A|10
8OVE|1|BE|U|11

Current chains

Chain BE

SrRNA 1

Nearby chains

Chain Ba

60S ribosomal protein L27

Chain Bj

60S ribosomal protein L34, putative