HL_8OVE_115
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8OVE|1|BG|G|144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OVE_115 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.1417
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BG|C|138
8OVE|1|BG|U|139
8OVE|1|BG|G|140
8OVE|1|BG|A|141
8OVE|1|BG|A|142
8OVE|1|BG|C|143
8OVE|1|BG|G|144
8OVE|1|BG|C|145
8OVE|1|BG|C|146
8OVE|1|BG|U|147
8OVE|1|BG|C|148
8OVE|1|BG|U|149
8OVE|1|BG|A|150
8OVE|1|BG|A|151
8OVE|1|BG|G|152
Current chains
- Chain BG
- SrRNA 2
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 60S ribosomal protein L13a, putative
- Chain Bs
- Ubiquitin-60S ribosomal protein L40
- Chain By
- 60S ribosomal protein L9, putative
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