HL_8OZ0_003
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGUGGUA(A2M)UUCUAG(A2M)G
- Length
- 17 nucleotides
- Bulged bases
- 8OZ0|1|W|A|158, 8OZ0|1|W|U|161
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OZ0_003 not in the Motif Atlas
- Geometric match to HL_4V9K_033
- Geometric discrepancy: 0.1671
- The information below is about HL_4V9K_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8OZ0|1|W|C|151
8OZ0|1|W|U|152
8OZ0|1|W|G|153
8OZ0|1|W|U|154
8OZ0|1|W|G|155
8OZ0|1|W|G|156
8OZ0|1|W|U|157
8OZ0|1|W|A|158
8OZ0|1|W|A2M|159
8OZ0|1|W|U|160
8OZ0|1|W|U|161
8OZ0|1|W|C|162
8OZ0|1|W|U|163
8OZ0|1|W|A|164
8OZ0|1|W|G|165
8OZ0|1|W|A2M|166
8OZ0|1|W|G|167
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S6
- Chain e
- 40S ribosomal protein S24
Coloring options: