8OZ0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8OZ0_001 | 1/W/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8OZ0_002 | 1/W/69:80 | No text annotation | geometric HL_361D_002 NA | |
| HL_8OZ0_003 | 1/W/151:167 | tRNA D-loop | geometric HL_4V9K_033 HL_89167.1 | |
| HL_8OZ0_041 | 1/W/223:298 | No text annotation | ||
| HL_8OZ0_005 | 1/W/289:295 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_8OZ0_007 | 1/W/377:387 | No text annotation | geometric HL_1KH6_003 HL_05426.1 | |
| HL_8OZ0_008 | 1/W/416:421 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8OZ0_009 | 1/W/441:452 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8OZ0_010 | 1/W/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8OZ0_011 | 1/W/498:504 | No text annotation | geometric HL_4WF9_011 HL_75660.6 | |
| HL_8OZ0_044 | 1/W/533:551 | No text annotation | ||
| HL_8OZ0_012 | 1/W/535:548 | No text annotation | ||
| HL_8OZ0_013 | 1/W/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8OZ0_014 | 1/W/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8OZ0_017 | 1/W/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8OZ0_018 | 1/W/833:841 | No text annotation | geometric HL_8C3A_018 NA | |
| HL_8OZ0_020 | 1/W/957:966 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8OZ0_021 | 1/W/994:999 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8OZ0_022 | 1/W/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8OZ0_023 | 1/W/1111:1122 | No text annotation | ||
| HL_8OZ0_024 | 1/W/1141:1146 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8OZ0_025 | 1/W/1178:1183 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8OZ0_026 | 1/W/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_8OZ0_027 | 1/W/1295:1304 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8OZ0_028 | 1/W/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_8OZ0_029 | 1/W/1366:1373 | No text annotation | geometric HL_4V88_215 NA | |
| HL_8OZ0_030 | 1/W/1416:1424 | No text annotation | geometric HL_2Y8W_001 NA | |
| HL_8OZ0_031 | 1/W/1460:1466 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_8OZ0_032 | 1/W/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_8OZ0_033 | 1/W/1614:1625 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8OZ0_034 | 1/W/1658:1666 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8OZ0_035 | 1/W/1750:1784 | No text annotation | ||
| HL_8OZ0_036 | 1/W/1847:1852 | GNRA variation | homologous HL_8C3A_227 NA | |
| HL_8OZ0_038 | 1/y/30:38 | tRNA anticodon loop | homologous HL_4WT8_216 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8OZ0_040 | No text annotation | ||
| HL_8OZ0_004 | No text annotation | ||
| HL_8OZ0_006 | Externally structured | ||
| HL_8OZ0_042 | No text annotation | ||
| HL_8OZ0_015 | No text annotation | ||
| HL_8OZ0_016 | No text annotation | ||
| HL_8OZ0_045 | No text annotation | ||
| HL_8OZ0_043 | No text annotation | ||
| HL_8OZ0_019 | No text annotation | ||
| HL_8OZ0_037 | tRNA D-loop | ||
| HL_8OZ0_039 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8OZ0_001 | 1/W/23:25, 1/W/649:651 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 NA | |
| IL_8OZ0_003 | 1/W/34:36, 1/W/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_8OZ0_004 | 1/W/37:40, 1/W/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_8OZ0_005 | 1/W/41:47, 1/W/479:481 | No text annotation | homologous IL_8C3A_395 NA | |
| IL_8OZ0_006 | 1/W/49:51, 1/W/476:477 | Minor groove platform | homologous IL_8C3A_396 NA | |
| IL_8OZ0_007 | 1/W/62:68, 1/W/81:86 | No text annotation | ||
| IL_8OZ0_008 | 1/W/108:110, 1/W/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 NA | |
| IL_8OZ0_009 | 1/W/110:112, 1/W/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_8OZ0_010 | 1/W/112:115, 1/W/348:349 | Multiple bulged bases | geometric IL_5W1H_001 IL_71421.1 | |
| IL_8OZ0_093 | 1/W/116:122, 1/W/341:347 | No text annotation | ||
| IL_8OZ0_094 | 1/W/145:151, 1/W/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8OZ0_014 | 1/W/188:192, 1/W/207:211 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_8OZ0_016 | 1/W/216:219, 1/W/302:309 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_8OZ0_017 | 1/W/223:289, 1/W/295:298 | No text annotation | ||
| IL_8OZ0_018 | 1/W/317:320, 1/W/331:333 | No text annotation | ||
| IL_8OZ0_019 | 1/W/359:364, 1/W/396:403 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8OZ0_020 | 1/W/366:371, 1/W/393:394 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_8OZ0_021 | 1/W/411:413, 1/W/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8OZ0_022 | 1/W/437:439, 1/W/454:456 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8OZ0_023 | 1/W/459:461, 1/W/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8OZ0_024 | 1/W/487:489, 1/W/511:512 | Single bulged U | homologous IL_8C3A_415 NA | |
| IL_8OZ0_095 | 1/W/491:495, 1/W/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8OZ0_026 | 1/W/495:496, 1/W/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8OZ0_027 | 1/W/527:530, 1/W/554:558 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 NA | |
| IL_8OZ0_029 | 1/W/563:565, 1/W/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8OZ0_030 | 1/W/566:569, 1/W/581:584 | tSH-tHW | geometric IL_5UNE_005 NA | |
| IL_8OZ0_031 | 1/W/599:606, 1/W/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_8OZ0_032 | 1/W/606:608, 1/W/635:636 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8OZ0_033 | 1/W/611:617, 1/W/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8OZ0_034 | 1/W/663:665, 1/W/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_8OZ0_035 | 1/W/665:671, 1/W/1161:1162 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8OZ0_036 | 1/W/673:675, 1/W/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8OZ0_037 | 1/W/676:680, 1/W/1025:1029 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8OZ0_038 | 1/W/692:696, 1/W/734:738 | No text annotation | ||
| IL_8OZ0_039 | 1/W/802:803, 1/W/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8OZ0_040 | 1/W/805:807, 1/W/856:858 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8OZ0_101 | 1/W/807:815, 1/W/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_8OZ0_042 | 1/W/874:876, 1/W/910:912 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 NA | |
| IL_8OZ0_043 | 1/W/877:879, 1/W/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8OZ0_046 | 1/W/922:923, 1/W/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8OZ0_047 | 1/W/925:927, 1/W/1014:1017 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 NA | |
| IL_8OZ0_096 | 1/W/928:931, 1/W/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.1 | |
| IL_8OZ0_049 | 1/W/931:935, 1/W/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_8OZ0_050 | 1/W/942:945, 1/W/981:984 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8OZ0_051 | 1/W/952:956, 1/W/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_8OZ0_052 | 1/W/1042:1047, 1/W/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_8OZ0_053 | 1/W/1047:1051, 1/W/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8OZ0_054 | 1/W/1091:1093, 1/W/1152:1158 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8OZ0_055 | 1/W/1098:1101, 1/W/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8OZ0_056 | 1/W/1101:1103, 1/W/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.1 | |
| IL_8OZ0_057 | 1/W/1108:1110, 1/W/1123:1124 | Minor groove platform | geometric IL_4LFB_004 IL_34520.1 | |
| IL_8OZ0_058 | 1/W/1168:1175, 1/W/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
| IL_8OZ0_059 | 1/W/1203:1204, 1/W/1694:1696 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8OZ0_060 | 1/W/1204:1209, 1/W/1691:1694 | tSH-tHW | geometric IL_5UNE_005 NA | |
| IL_8OZ0_102 | 1/W/1212:1217, 1/W/1681:1688 | No text annotation | ||
| IL_8OZ0_063 | 1/W/1230:1232, 1/W/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_8OZ0_064 | 1/W/1235:1236, 1/W/1521:1523 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8OZ0_065 | 1/W/1270:1272, 1/W/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8OZ0_066 | 1/W/1281:1287, 1/W/1314:1316 | No text annotation | ||
| IL_8OZ0_097 | 1/W/1281:1290, 1/W/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_8OZ0_067 | 1/W/1287:1290, 1/W/1309:1314 | No text annotation | ||
| IL_8OZ0_069 | 1/W/1325:1327, 1/W/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8OZ0_070 | 1/W/1329:1333, 1/W/1498:1500 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_8OZ0_098 | 1/W/1329:1335, 1/W/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_8OZ0_071 | 1/W/1333:1335, 1/W/1492:1498 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_8OZ0_072 | 1/W/1337:1338, 1/W/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8OZ0_073 | 1/W/1347:1349, 1/W/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_8OZ0_099 | 1/W/1363:1365, 1/W/1374:1375 | Minor groove platform | homologous IL_8P9A_443 IL_34520.1 | |
| IL_8OZ0_075 | 1/W/1402:1406, 1/W/1440:1444 | No text annotation | ||
| IL_8OZ0_076 | 1/W/1408:1410, 1/W/1431:1438 | No text annotation | homologous IL_8C3A_464 NA | |
| IL_8OZ0_078 | 1/W/1537:1540, 1/W/1593:1596 | No text annotation | ||
| IL_8OZ0_100 | 1/W/1541:1550, 1/W/1582:1592 | No text annotation | ||
| IL_8OZ0_079 | 1/W/1550:1558, 1/W/1577:1582 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_8OZ0_080 | 1/W/1560:1562, 1/W/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8OZ0_081 | 1/W/1604:1612, 1/W/1627:1635 | No text annotation | ||
| IL_8OZ0_082 | 1/W/1700:1702, 1/W/1833:1836 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_8OZ0_083 | 1/W/1702:1705, 1/W/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8OZ0_084 | 1/W/1706:1708, 1/W/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8OZ0_085 | 1/W/1708:1711, 1/W/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_8OZ0_086 | 1/W/1714:1716, 1/W/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8OZ0_087 | 1/W/1717:1720, 1/W/1813:1816 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8OZ0_089 | 1/W/1729:1731, 1/W/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8OZ0_090 | 1/W/1733:1736, 1/W/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8OZ0_091 | 1/W/1739:1741, 1/W/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_01003.1 | |
| IL_8OZ0_092 | 1/W/1742:1746, 1/W/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8OZ0_002 | Isolated non-canonical cWW pair | ||
| IL_8OZ0_011 | No text annotation | ||
| IL_8OZ0_012 | No text annotation | ||
| IL_8OZ0_013 | No text annotation | ||
| IL_8OZ0_015 | No text annotation | ||
| IL_8OZ0_025 | No text annotation | ||
| IL_8OZ0_028 | No text annotation | ||
| IL_8OZ0_041 | No text annotation | ||
| IL_8OZ0_044 | Isolated cWH basepair | ||
| IL_8OZ0_045 | No text annotation | ||
| IL_8OZ0_048 | No text annotation | ||
| IL_8OZ0_061 | Isolated non-canonical cWW pair | ||
| IL_8OZ0_062 | No text annotation | ||
| IL_8OZ0_068 | No text annotation | ||
| IL_8OZ0_074 | Minor groove platform with extra cWW | ||
| IL_8OZ0_077 | No text annotation | ||
| IL_8OZ0_088 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8OZ0_009 | 1/W/40:41, 1/W/481:487, 1/W/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_8OZ0_010 | 1/W/40:47, 1/W/479:487, 1/W/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_8OZ0_011 | 1/W/682:685, 1/W/917:922, 1/W/1022:1023 | No text annotation | ||
| J3_8OZ0_012 | 1/W/682:685, 1/W/917:923, 1/W/1019:1023 | No text annotation | ||
| J3_8OZ0_001 | 1/W/816:819, 1/W/829:831, 1/W/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_8OZ0_002 | 1/W/938:941, 1/W/985:993, 1/W/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_8OZ0_003 | 1/W/1094:1096, 1/W/1136:1140, 1/W/1147:1151 | No text annotation | ||
| J3_8OZ0_013 | 1/W/1218:1221, 1/W/1645:1651, 1/W/1673:1680 | No text annotation | ||
| J3_8OZ0_004 | 1/W/1225:1228, 1/W/1530:1532, 1/W/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8OZ0_005 | 1/W/1237:1244, 1/W/1255:1266, 1/W/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8OZ0_006 | 1/W/1272:1277, 1/W/1320:1324, 1/W/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8OZ0_007 | 1/W/1340:1345, 1/W/1384:1389, 1/W/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_8OZ0_014 | 1/W/1350:1351, 1/W/1360:1363, 1/W/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8OZ0_008 | 1/W/1532:1536, 1/W/1597:1604, 1/W/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8OZ0_001 | 1/W/98:106, 1/W/355:357, 1/W/405:409, 1/W/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_8OZ0_002 | 1/W/671:673, 1/W/1032:1037, 1/W/1078:1089, 1/W/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_8OZ0_003 | 1/y/7:11, 1/y/23:26, 1/y/42:48, 1/y/64:65 | No text annotation | ||
| J5_8OZ0_001 | 1/W/30:34, 1/W/521:527, 1/W/558:563, 1/W/592:595, 1/W/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8OZ0_002 | 1/W/30:34, 1/W/521:527, 1/W/558:565, 1/W/585:595, 1/W/641:644 | No text annotation | ||
| J5_8OZ0_003 | 1/W/53:68, 1/W/81:96, 1/W/434:436, 1/W/457:459, 1/W/470:474 | No text annotation | ||
| J5_8OZ0_004 | 1/W/123:129, 1/W/183:185, 1/W/214:215, 1/W/310:315, 1/W/335:340 | No text annotation | ||
| J5_8OZ0_005 | 1/W/685:691, 1/W/739:746, 1/W/796:800, 1/W/865:874, 1/W/912:917 | No text annotation |
Problematic loops
No problematic loops
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