HL_8OZ0_011

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8OZ0|1|W|A|500, 8OZ0|1|W|C|502, 8OZ0|1|W|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OZ0_011 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1682

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8OZ0|1|W|C|498
8OZ0|1|W|G|499
8OZ0|1|W|A|500
8OZ0|1|W|C|501
8OZ0|1|W|C|502
8OZ0|1|W|C|503
8OZ0|1|W|G|504

Current chains

Chain W

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S4, X isoform

Chain e

40S ribosomal protein S24