HL_8OZ0_038
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OZ0_038 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.1324
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8OZ0|1|y|G|30
8OZ0|1|y|C|31
8OZ0|1|y|C|32
8OZ0|1|y|C|33
8OZ0|1|y|A|34
8OZ0|1|y|U|35
8OZ0|1|y|A|36
8OZ0|1|y|A|37
8OZ0|1|y|C|38
Current chains
- Chain y
- tRNAiMet
Nearby chains
- Chain D
- Eukaryotic translation initiation factor 2 subunit 1
- Chain G
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain H
- Eukaryotic translation initiation factor 5
- Chain W
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 40S ribosomal protein S16
- Chain z
- mRNA
Coloring options: