HL_8OZ0_043

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

8OZ0|1|W|U|890, 8OZ0|1|W|G|891, 8OZ0|1|W|U|892, 8OZ0|1|W|U|893, 8OZ0|1|W|U|896, 8OZ0|1|W|U|899, 8OZ0|1|W|C|900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OZ0|1|W|C|884
8OZ0|1|W|U|885
8OZ0|1|W|A|886
8OZ0|1|W|U|887
8OZ0|1|W|U|888
8OZ0|1|W|U|889
8OZ0|1|W|U|890
8OZ0|1|W|G|891
8OZ0|1|W|U|892
8OZ0|1|W|U|893
8OZ0|1|W|G|894
8OZ0|1|W|G|895
8OZ0|1|W|U|896
8OZ0|1|W|U|897
8OZ0|1|W|U|898
8OZ0|1|W|U|899
8OZ0|1|W|C|900
8OZ0|1|W|G|901
8OZ0|1|W|G|902

Current chains

Chain W

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11