HL_8P09_002
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P09_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1163
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8P09|1|1|G|31
8P09|1|1|C|32
8P09|1|1|C|33
8P09|1|1|C|34
8P09|1|1|A|35
8P09|1|1|U|36
8P09|1|1|T6A|37
8P09|1|1|A|38
8P09|1|1|C|39
Current chains
- Chain 1
- initiator methionylated tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain R
- 40S ribosomal protein uS19
- Chain S
- 40S ribosomal protein uS9
- Chain j
- Eukaryotic translation initiation factor 4C
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