HL_8P09_013
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8P09|1|2|G|441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P09_013 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0837
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|C|431
8P09|1|2|C|432
8P09|1|2|U|433
8P09|1|2|G|434
8P09|1|2|A|435
8P09|1|2|G|436
8P09|1|2|A|437
8P09|1|2|A|438
8P09|1|2|A|439
8P09|1|2|C|440
8P09|1|2|G|441
8P09|1|2|G|442
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain I
- 40S ribosomal protein S6
- Chain K
- 40S ribosomal protein S8
- Chain a
- 40S ribosomal protein S24
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